Expansion and Functional Divergence of AP2 Group Genes in Spermatophytes Determined by Molecular Evolution and Arabidopsis Mutant Analysis
Identifieur interne : 000226 ( Main/Exploration ); précédent : 000225; suivant : 000227Expansion and Functional Divergence of AP2 Group Genes in Spermatophytes Determined by Molecular Evolution and Arabidopsis Mutant Analysis
Auteurs : Pengkai Wang [République populaire de Chine] ; Tielong Cheng [République populaire de Chine] ; Mengzhu Lu [République populaire de Chine] ; Guangxin Liu [République populaire de Chine] ; Meiping Li [République populaire de Chine] ; Jisen Shi [République populaire de Chine] ; Ye Lu [République populaire de Chine] ; Thomas Laux [Allemagne] ; Jinhui Chen [République populaire de Chine]Source :
- Frontiers in Plant Science [ 1664-462X ] ; 2016.
Abstract
The
Url:
DOI: 10.3389/fpls.2016.01383
PubMed: 27703459
PubMed Central: 5029118
Affiliations:
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<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Expansion and Functional Divergence of AP2 Group Genes in Spermatophytes Determined by Molecular Evolution and <italic>Arabidopsis</italic> Mutant Analysis</title><author><name sortKey="Wang, Pengkai" sort="Wang, Pengkai" uniqKey="Wang P" first="Pengkai" last="Wang">Pengkai Wang</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>Ministry of Education, Key Laboratory of Forest Genetics and Biotechnology, Nanjing Forestry University</institution><country>Nanjing, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="aff2"><institution>Suzhou Polytechnic Institute of Agriculture</institution><country>Suzhou, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Cheng, Tielong" sort="Cheng, Tielong" uniqKey="Cheng T" first="Tielong" last="Cheng">Tielong Cheng</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>Ministry of Education, Key Laboratory of Forest Genetics and Biotechnology, Nanjing Forestry University</institution><country>Nanjing, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Lu, Mengzhu" sort="Lu, Mengzhu" uniqKey="Lu M" first="Mengzhu" last="Lu">Mengzhu Lu</name><affiliation wicri:level="1"><nlm:aff id="aff3"><institution>Laboratory of Biotechnology, Chinese Academy of Forestry</institution><country>Beijing, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Liu, Guangxin" sort="Liu, Guangxin" uniqKey="Liu G" first="Guangxin" last="Liu">Guangxin Liu</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>Ministry of Education, Key Laboratory of Forest Genetics and Biotechnology, Nanjing Forestry University</institution><country>Nanjing, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Li, Meiping" sort="Li, Meiping" uniqKey="Li M" first="Meiping" last="Li">Meiping Li</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>Ministry of Education, Key Laboratory of Forest Genetics and Biotechnology, Nanjing Forestry University</institution><country>Nanjing, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Shi, Jisen" sort="Shi, Jisen" uniqKey="Shi J" first="Jisen" last="Shi">Jisen Shi</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>Ministry of Education, Key Laboratory of Forest Genetics and Biotechnology, Nanjing Forestry University</institution><country>Nanjing, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Lu, Ye" sort="Lu, Ye" uniqKey="Lu Y" first="Ye" last="Lu">Ye Lu</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>Ministry of Education, Key Laboratory of Forest Genetics and Biotechnology, Nanjing Forestry University</institution><country>Nanjing, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Laux, Thomas" sort="Laux, Thomas" uniqKey="Laux T" first="Thomas" last="Laux">Thomas Laux</name><affiliation wicri:level="1"><nlm:aff id="aff4"><institution>Institute of Biology III, University of Freiburg</institution><country>Freiburg, Germany</country></nlm:aff><country xml:lang="fr">Allemagne</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Chen, Jinhui" sort="Chen, Jinhui" uniqKey="Chen J" first="Jinhui" last="Chen">Jinhui Chen</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>Ministry of Education, Key Laboratory of Forest Genetics and Biotechnology, Nanjing Forestry University</institution><country>Nanjing, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">27703459</idno><idno type="pmc">5029118</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5029118</idno><idno type="RBID">PMC:5029118</idno><idno type="doi">10.3389/fpls.2016.01383</idno><date when="2016">2016</date><idno type="wicri:Area/Pmc/Corpus">000F42</idno><idno type="wicri:Area/Pmc/Curation">000F41</idno><idno 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Chine</country><wicri:regionArea></wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="aff2"><institution>Suzhou Polytechnic Institute of Agriculture</institution><country>Suzhou, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Cheng, Tielong" sort="Cheng, Tielong" uniqKey="Cheng T" first="Tielong" last="Cheng">Tielong Cheng</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>Ministry of Education, Key Laboratory of Forest Genetics and Biotechnology, Nanjing Forestry University</institution><country>Nanjing, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Lu, Mengzhu" sort="Lu, Mengzhu" uniqKey="Lu M" first="Mengzhu" last="Lu">Mengzhu Lu</name><affiliation wicri:level="1"><nlm:aff id="aff3"><institution>Laboratory of Biotechnology, Chinese Academy of Forestry</institution><country>Beijing, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Liu, Guangxin" sort="Liu, Guangxin" uniqKey="Liu G" first="Guangxin" last="Liu">Guangxin Liu</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>Ministry of Education, Key Laboratory of Forest Genetics and Biotechnology, Nanjing Forestry University</institution><country>Nanjing, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Li, Meiping" sort="Li, Meiping" uniqKey="Li M" first="Meiping" last="Li">Meiping Li</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>Ministry of Education, Key Laboratory of Forest Genetics and Biotechnology, Nanjing Forestry University</institution><country>Nanjing, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Shi, Jisen" sort="Shi, Jisen" uniqKey="Shi J" first="Jisen" last="Shi">Jisen Shi</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>Ministry of Education, Key Laboratory of Forest Genetics and Biotechnology, Nanjing Forestry University</institution><country>Nanjing, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Lu, Ye" sort="Lu, Ye" uniqKey="Lu Y" first="Ye" last="Lu">Ye Lu</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>Ministry of Education, Key Laboratory of Forest Genetics and Biotechnology, Nanjing Forestry University</institution><country>Nanjing, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Laux, Thomas" sort="Laux, Thomas" uniqKey="Laux T" first="Thomas" last="Laux">Thomas Laux</name><affiliation wicri:level="1"><nlm:aff id="aff4"><institution>Institute of Biology III, University of Freiburg</institution><country>Freiburg, Germany</country></nlm:aff><country xml:lang="fr">Allemagne</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Chen, Jinhui" sort="Chen, Jinhui" uniqKey="Chen J" first="Jinhui" last="Chen">Jinhui Chen</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>Ministry of Education, Key Laboratory of Forest Genetics and Biotechnology, Nanjing Forestry University</institution><country>Nanjing, China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea></wicri:regionArea></affiliation></author></analytic><series><title level="j">Frontiers in Plant Science</title><idno type="eISSN">1664-462X</idno><imprint><date when="2016">2016</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>The <italic>APETALA2</italic> (<italic>AP2</italic>) genes represent the AP2 group within a large group of DNA-binding proteins called AP2/EREBP. The <italic>AP2</italic> gene is functional and necessary for flower development, stem cell maintenance, and seed development, whereas the other members of AP2 group redundantly affect flowering time. Here we study the phylogeny of AP2 group genes in spermatophytes. Spermatophyte AP2 group genes can be classified into AP2 and TOE types, six clades, and we found that the AP2 group homologs in gymnosperms belong to the AP2 type, whereas TOE types are absent, which indicates the AP2 type gene are more ancient and TOE type was split out of AP2 type and losing the major function. In Brassicaceae, the expansion of AP2 and TOE type lead to the gene number of AP2 group were up to six. Purifying selection appears to have been the primary driving force of spermatophyte AP2 group evolution, although positive selection occurred in the AP2 clade. The transition from exon to intron of <italic>AtAP2</italic> in <italic>Arabidopsis</italic> mutant leads to the loss of gene function and the same situation was found in <italic>AtTOE2</italic>. Combining this evolutionary analysis and published research, the results suggest that typical AP2 group genes may first appear in gymnosperms and diverged in angiosperms, following expansion of group members and functional differentiation. In angiosperms, <italic>AP2</italic> genes (AP2 clade) inherited key functions from ancestors and other genes of AP2 group lost most function but just remained flowering time controlling in gene formation. In this study, the phylogenies of AP2 group genes in spermatophytes was analyzed, which supported the evidence for the research of gene functional evolution of AP2 group.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Anisimova, M" uniqKey="Anisimova M">M. 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Xue</name></author></analytic></biblStruct></listBibl></div1></back></TEI><affiliations><list><country><li>Allemagne</li><li>République populaire de Chine</li></country></list><tree><country name="République populaire de Chine"><noRegion><name sortKey="Wang, Pengkai" sort="Wang, Pengkai" uniqKey="Wang P" first="Pengkai" last="Wang">Pengkai Wang</name></noRegion><name sortKey="Chen, Jinhui" sort="Chen, Jinhui" uniqKey="Chen J" first="Jinhui" last="Chen">Jinhui Chen</name><name sortKey="Cheng, Tielong" sort="Cheng, Tielong" uniqKey="Cheng T" first="Tielong" last="Cheng">Tielong Cheng</name><name sortKey="Li, Meiping" sort="Li, Meiping" uniqKey="Li M" first="Meiping" last="Li">Meiping Li</name><name sortKey="Liu, Guangxin" sort="Liu, Guangxin" uniqKey="Liu G" first="Guangxin" last="Liu">Guangxin Liu</name><name sortKey="Lu, Mengzhu" sort="Lu, Mengzhu" uniqKey="Lu M" first="Mengzhu" last="Lu">Mengzhu Lu</name><name sortKey="Lu, Ye" sort="Lu, Ye" uniqKey="Lu Y" first="Ye" last="Lu">Ye Lu</name><name sortKey="Shi, Jisen" sort="Shi, Jisen" uniqKey="Shi J" first="Jisen" last="Shi">Jisen Shi</name><name sortKey="Wang, Pengkai" sort="Wang, Pengkai" uniqKey="Wang P" first="Pengkai" last="Wang">Pengkai Wang</name></country><country name="Allemagne"><noRegion><name sortKey="Laux, Thomas" sort="Laux, Thomas" uniqKey="Laux T" first="Thomas" last="Laux">Thomas Laux</name></noRegion></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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